Fertility and Immunosuppressants: What You Need to Know About Medication Risks and Planning

published : Dec, 12 2025

Fertility and Immunosuppressants: What You Need to Know About Medication Risks and Planning

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Planning a pregnancy while taking immunosuppressants isn’t something most people expect to face. But for those managing autoimmune diseases like lupus, rheumatoid arthritis, or who’ve had organ transplants, it’s a real and urgent question: Can I safely get pregnant while on these drugs? The answer isn’t yes or no-it’s complex, personal, and depends on which medication you’re taking, how long you’ve been on it, and whether you’ve had time to plan ahead.

Not All Immunosuppressants Are Created Equal

The big mistake people make is treating all immunosuppressants the same. They’re not. Some are safe during pregnancy. Others can cause permanent damage to fertility or serious birth defects. Knowing the difference can mean the difference between a healthy baby and a preventable tragedy.

Azathioprine is one of the safest options. Over 1,200 pregnancies in women taking this drug have been tracked since the 1990s. No increase in birth defects, miscarriages, or developmental issues has been found. It’s the go-to choice for many doctors when someone wants to conceive. If you’re on something else, switching to azathioprine before pregnancy might be the smartest move you make.

On the other end of the spectrum is cyclophosphamide. This drug is used for severe autoimmune conditions and some cancers. It’s brutal on the ovaries. In women who take more than 7 grams per square meter of body surface, 60-70% experience permanent ovarian failure. That means no more eggs, no more natural pregnancy. For men, it can cause irreversible azoospermia-no sperm at all-in up to 40% of cases. If you’re on this drug and thinking about kids, fertility preservation (freezing eggs or sperm) needs to happen before you start, not after.

What About Steroids Like Prednisone?

Corticosteroids like prednisone are common. They’re often used alongside other immunosuppressants. Many people assume they’re harmless because they’re “just steroids.” But they’re not. Prednisone can interfere with ovulation and reduce sperm production. It also raises the risk of premature rupture of membranes by 15-20%. That means your water breaks too early, increasing the chance of preterm birth.

Here’s the good news: you usually don’t need to stop prednisone completely during pregnancy. Your doctor can adjust the dose to keep your disease under control while minimizing risks. But you can’t just keep taking the same dose you were on before pregnancy. Monitoring is critical.

Drugs That Require a Head Start

Some medications need to be cleared from your system months before you try to conceive. Methotrexate is one of them. It’s a powerful drug used for rheumatoid arthritis and psoriasis. It’s also highly toxic to developing embryos. Even small amounts can cause severe birth defects. The rule? Stop methotrexate at least three months before trying to get pregnant. Some doctors recommend waiting six months to be extra safe.

Sulfasalazine is another one that catches people off guard. It doesn’t cause birth defects, but it cuts sperm counts by 50-60%. The good news? That drop is reversible. Once you stop taking it, sperm counts bounce back in about three months. But you can’t just stop cold turkey and expect to get pregnant next month. Plan ahead.

Man in hospital with sperm sample warning on one side, freezing sperm with hope on the other.

Sirolimus and Belatacept: The New Players

Newer drugs like sirolimus and belatacept are changing the game-but not always for the better. Sirolimus is linked to a 43% miscarriage rate in early case reports. That’s more than double the normal rate. Because of this, it’s still considered contraindicated during pregnancy. No exceptions.

Belatacept, on the other hand, is promising. Only three pregnancies have been documented in women taking it after kidney transplants. All three babies were born healthy, with no birth defects. That’s encouraging, but it’s not enough data to call it safe. Doctors may consider it in rare cases, but only after careful discussion and with close monitoring.

Male Fertility Is Often Overlooked

Most people think fertility issues are a woman’s problem. That’s not true. Immunosuppressants affect men too. Sulfasalazine lowers sperm count. Cyclophosphamide can wipe it out permanently. Even azathioprine, which is safe for women, hasn’t been studied enough in men to say it’s risk-free.

The FDA recommends semen analysis for men on these drugs: once before starting, once after one full sperm cycle (about 74 days), and again 13 weeks after stopping. Most men never get tested. They assume they’re fine. They’re not. If you’re trying to conceive and your partner is on immunosuppressants, ask your doctor about sperm testing. It’s simple, non-invasive, and could save months of frustration.

Medical team around a glowing fertility timeline with drug icons and baby symbol.

What Happens After the Baby Is Born?

Breastfeeding is another layer. Some drugs pass into breast milk. Chlorambucil? Absolutely no breastfeeding. It’s too toxic. Azathioprine? Probably safe, but only in low doses and with monitoring. The baby’s immune system is still developing, and even small amounts of immunosuppressants can increase infection risk.

Studies show babies born to mothers on immunosuppressants have 2.3 times higher risk of infections in their first year. That doesn’t mean you can’t breastfeed-but it does mean you need to work with your pediatrician. Watch for fever, poor feeding, or unusual fussiness. Don’t assume every cold is just a cold.

Preconception Counseling Isn’t Optional

This is the most important point: Don’t wait until you’re pregnant to talk to your doctor. Waiting is dangerous.

Preconception counseling means meeting with your rheumatologist, transplant specialist, and a reproductive endocrinologist-at least three to six months before you start trying. This isn’t a quick chat. It’s a full review of your medications, disease activity, organ function, and fertility status.

For example, if your creatinine level (a kidney function marker) is above 13 mg/L before pregnancy, your risk of preeclampsia skyrockets. That’s not a number you want to find out after you’re already pregnant. Same with your disease activity. If your lupus is flaring, getting pregnant could make it worse. You need to get your condition stable first.

And yes, this means you might have to stop your current meds and switch. It’s inconvenient. It’s scary. But it’s better than risking your baby’s life.

The Bottom Line: Plan, Don’t Guess

Twenty years ago, doctors told women with autoimmune diseases not to get pregnant. Now, thanks to better drugs and better science, most can. But only if they plan.

You can’t rely on old advice. You can’t assume your drug is safe because it’s been around for years. Some of the oldest drugs-like chlorambucil-are still linked to kidney and heart defects in babies. Others, like azathioprine, have decades of safety data.

The goal isn’t to avoid pregnancy. It’s to have a healthy one. That means:

  • Knowing exactly which drug you’re on and what it does to fertility
  • Stopping dangerous drugs months before conception
  • Getting sperm and egg health checked
  • Switching to safer alternatives if needed
  • Working with a team, not just one doctor
  • Monitoring your baby after birth

If you’re on immunosuppressants and thinking about having a child, your first step isn’t buying a pregnancy test. It’s calling your doctor and asking: “What do I need to do to get pregnant safely?” Don’t wait. Don’t assume. Plan.

Can I get pregnant while taking azathioprine?

Yes. Azathioprine is one of the safest immunosuppressants for pregnancy. Over 1,200 documented pregnancies show no increased risk of birth defects, miscarriage, or developmental problems. It’s often the preferred drug for people planning to conceive. But always consult your doctor before making any changes to your treatment plan.

How long before pregnancy should I stop methotrexate?

Stop methotrexate at least three months before trying to conceive. Some doctors recommend waiting six months. Methotrexate is highly toxic to embryos and can cause severe birth defects, even in small doses. It stays in your system longer than many people realize. Waiting ensures it’s fully cleared before conception.

Does cyclophosphamide cause permanent infertility?

Yes, in many cases. Women who take cumulative doses over 7 grams per square meter of body surface have a 60-70% chance of permanent ovarian failure. Men can develop irreversible azoospermia in up to 40% of cases. If you’re on this drug and want children, fertility preservation-freezing eggs or sperm-should happen before you start treatment.

Can I breastfeed while on immunosuppressants?

It depends on the drug. Chlorambucil and cyclophosphamide are not safe for breastfeeding. Azathioprine is generally considered safe in low doses, but your baby’s immune system should be monitored. Always discuss breastfeeding with your doctor and pediatrician. Never assume a drug is safe just because it’s used during pregnancy.

Why is preconception counseling so important?

Because pregnancy changes how your body handles medication, and your disease can flare. If your kidney function is poor or your autoimmune condition is active, pregnancy can be life-threatening. Preconception counseling lets you adjust medications, stabilize your health, and test fertility before you get pregnant-reducing risks for you and your baby.

Are newer immunosuppressants safer for pregnancy?

Not necessarily. Drugs like sirolimus have shown higher miscarriage rates and are contraindicated. Belatacept looks promising with three healthy births reported, but data is extremely limited. Newer drugs often lack long-term studies on fetal outcomes. The safest choices are still the older, well-studied ones like azathioprine.

Should men on immunosuppressants get sperm tested?

Yes. Many immunosuppressants reduce sperm count or quality, sometimes reversibly. The FDA recommends semen analysis before starting treatment, after one spermatogenic cycle (74 days), and again 13 weeks after stopping. Most men skip this, but it’s critical for planning conception. Low sperm count doesn’t mean infertility-but it does mean you need to adjust your timeline.

Comments (15)

Keasha Trawick

Azathioprine is the MVP of pregnancy-safe immunosuppressants-like the Honda Accord of autoimmune meds. No drama, no birth defects, just steady, reliable safety data from over a thousand pregnancies. Meanwhile, cyclophosphamide? That’s the muscle car with no seatbelts-fun until you crash and lose your ovaries. Stop treating all immunosuppressants like they’re interchangeable. You wouldn’t swap out your insulin for a placebo, so why gamble with your fertility?

Deborah Andrich

I wish more doctors told patients this before they started chemo. My friend got diagnosed with lupus and was put on methotrexate without a word about fertility. By the time she wanted kids, it was too late. This info should be standard. No one should have to learn this the hard way.

Tommy Watson

lol so azathioprine is safe but prednisone is bad? why not just take tylenol and call it a day? my rheum doc says im fine on my current cocktail and i dont trust this article. also why is everyone so obsessed with pregnancy like its the endgame of life?

Sheldon Bird

This is the kind of info that saves lives. Seriously. If you're on any of these meds and thinking about kids, DO NOT WAIT. Talk to your doc, get tested, switch if needed. You've got time. Don't blow it. I've seen too many people regret not planning ahead. You can do this. 💪

Karen Mccullouch

So let me get this straight-women are supposed to stop their life-saving meds for months just to have a baby? Meanwhile, men can just keep taking cyclophosphamide and blame their infertility on their wife? This system is rigged. Why isn't there a national mandate for preconception counseling? This isn't about choice. It's about survival.

Michael Gardner

Interesting. But have you considered that most of this data comes from cis women with access to top-tier healthcare? What about trans men on immunosuppressants? Or people in rural areas who can't afford fertility preservation? This article reads like a luxury guide for the privileged. The real crisis is systemic access, not individual drug choices.

Willie Onst

Man, I just read this and felt like I got handed a flashlight in a dark tunnel. I’ve been on azathioprine for 8 years after my kidney transplant. Never thought about kids-too scared. But now? I’m calling my doc Monday. This isn’t just medical advice. It’s hope. And hope is rare when you’re living with a chronic illness. Thank you for writing this. Seriously. You made someone feel seen today.

Ronan Lansbury

Let’s be real-this is all Big Pharma propaganda. Azathioprine? It’s just the old drug they want you to stick with because it’s cheap. The real story? The FDA and pharma are suppressing data on newer agents because they’re not profitable enough. Sirolimus has a 43% miscarriage rate? That’s not science. That’s a cover-up. Google 'fertility suppression protocols' and tell me you still believe this.

Jennifer Taylor

I DID THIS. I was on methotrexate. I got pregnant at 3 months. My baby had a cleft palate. I lost her. I’m 34 now. I’m terrified to try again. But I saw someone say azathioprine is safe and I cried. Not because I’m happy. Because I’m so angry. Why didn’t anyone tell me? Why didn’t they warn me? I’m not just a patient. I’m a ghost. And I’m not alone.

Shelby Ume

As a reproductive endocrinologist, I can confirm: preconception counseling is non-negotiable. Patients who delay until after conception have 3x higher rates of preeclampsia, preterm birth, and neonatal ICU admissions. The data is unequivocal. The challenge? Most rheumatologists don’t refer. Most OB-GYNs don’t ask. The gap is lethal. We need mandatory interdisciplinary referrals. This isn’t opinion. It’s protocol.

Jade Hovet

OMG I JUST SAW THIS AND MY HEART STOPS 😭 I’M ON AZATHIOPRINE AND WANT A BABY SO BAD. I THOUGHT I HAD TO STOP EVERYTHING. THANK YOU FOR THIS. I’M CALLING MY DOCTOR TOMORROW 🥹💖 #fertilityawareness #autoimmunequeen

nina nakamura

You people are naive. The real danger isn’t the drugs-it’s the fact that women are being pressured into motherhood while their immune systems are already compromised. This article is a glorified ad for the fertility-industrial complex. Who benefits? Pharma. Hospitals. Insurance companies. Not you. Your body is not a vessel. Stop romanticizing pregnancy.

Rawlson King

This is the most irresponsible piece of medical misinformation I’ve seen in years. You claim azathioprine is safe based on 1,200 pregnancies? That’s a tiny sample size. Where’s the long-term follow-up? Where are the neurodevelopmental studies? You’re giving false reassurance. This isn’t advice-it’s a gamble with human lives.

Constantine Vigderman

Guys. I’m a guy. On sulfasalazine. Never got tested. Thought I was fine. Wife couldn’t get pregnant for 14 months. Finally got a semen analysis. Sperm count was 3 million/mL. Normal is 15M+. We were about to start IVF. Then I stopped the drug. Three months later? 58M/mL. We conceived naturally. This isn’t just about women. Men? You’re not off the hook. Get tested. It takes 74 days. You’ve got time. Don’t be the guy who waits until it’s too late. You owe it to your future kid.

Tom Zerkoff

As a transplant physician, I’ve managed over 200 pregnancies in immunosuppressed patients. The most successful outcomes occur when patients are stabilized for at least six months preconception, with disease activity in remission, renal function stable, and medication optimized. The single greatest predictor of success is not the drug-but the timing of intervention. Delaying counseling until after conception increases maternal and fetal mortality by 300%. This is not hyperbole. It is documented in the American Journal of Transplantation. We must institutionalize preconception pathways. Lives depend on it.

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about author

Matt Hekman

Matt Hekman

Hi, I'm Caspian Braxton, a pharmaceutical expert with a passion for researching and writing about medications and various diseases. My articles aim to educate readers on the latest advancements in drug development and treatment options. I believe in empowering people with knowledge, so they can make informed decisions about their health. With a deep understanding of the pharmaceutical industry, I am dedicated to providing accurate and reliable information to my readers.

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